rs27277868 SNP Detail

Summary

• ID
  rs27277868
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:144369861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGAA AACAGGTACT GCAATAAAGC
  Y
  AGGCTCCCGA CGCTAAGCGA GCAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37481207	NES08947953	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T		T	T	T	T		C
ss320536503	CHEV_2_144353677	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27277868					SNP	T	T	T	T	T	T	T	C	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37481207	NES08947953	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144369861 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12356	CpG island 12356	within coordinates
Dzank1	double zinc ribbon and ankyrin repeat domains 1	527 bp upstream
Polr3f	polymerase (RNA) III (DNA directed) polypeptide F	within coordinates
Rr566471	regulatory region 566471	1790 bp distal
Rr566472	regulatory region 566472	554 bp distal
Rr566473	regulatory region 566473	183 bp distal
Rr566474	regulatory region 566474	within coordinates
Tssr20540	transcription start site region 20540	414 bp downstream
Tssr20541	transcription start site region 20541	168 bp downstream
Tssr20542	transcription start site region 20542	139 bp downstream
Tssr26607	transcription start site region 26607	517 bp upstream
Tssr26608	transcription start site region 26608	509 bp upstream
Tssr26609	transcription start site region 26609	491 bp upstream
Tssr26610	transcription start site region 26610	429 bp upstream
Tssr26611	transcription start site region 26611	404 bp upstream