rs27277872 SNP Detail

Summary

• ID
  rs27277872
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:144368958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCGAGTGAGA GTCAGCTAAA ATAAAGATAG CTGAAAACTA
  GATTCTAAAT AAACACCGTT GGTTCGAGAC TGAAGTGCTC ACGGTTAGCT ATTAGCTGCT
  Y
  TTGGAAACCT GGGGTGGTCA CTGGACCTCA CAGGAAGGAG ACAGAGATGG CTGATTCGCT
  AGGTCCACAC CGCAGCCTGG TGTCAGTGTC ATGCCACCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37481211	NES08947946	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		T	C	T	T	C	T	T	C
ss45316960	mCV22517525	ABI	CRAMUS_MOUSE	f	SNP		T	C					C	T
ss147798093	ENSMUSSNP6205432	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27277872					SNP	T	T	C	C	C	T	C	C	T	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37481211	NES08947946	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144368958 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12356	CpG island 12356	64 bp proximal
Dzank1	double zinc ribbon and ankyrin repeat domains 1	within coordinates
Polr3f	polymerase (RNA) III (DNA directed) polypeptide F	707 bp upstream
Rr566471	regulatory region 566471	887 bp distal
Rr566472	regulatory region 566472	within coordinates
Rr566473	regulatory region 566473	350 bp proximal
Rr566474	regulatory region 566474	721 bp proximal
Tssr20540	transcription start site region 20540	477 bp upstream
Tssr20541	transcription start site region 20541	700 bp upstream
Tssr20542	transcription start site region 20542	753 bp upstream
Tssr26607	transcription start site region 26607	303 bp downstream
Tssr26608	transcription start site region 26608	387 bp downstream
Tssr26609	transcription start site region 26609	401 bp downstream
Tssr26610	transcription start site region 26610	463 bp downstream
Tssr26611	transcription start site region 26611	488 bp downstream