rs27277877 SNP Detail

Summary

• ID
  rs27277877
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:144368208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACTCACT CTCCTGACTT
  CAAGGCAACT CATTACATAA GGGGAGCAGG TAACTCTGCA CGTAGCATGA ATTACTTAGA
  GCCAAATCTT AAAAGAGGTT CTAACCCCCC ACAGTCTCAC CTTTGCAAAC CACTGCAGTG
  TATTGTATTT TGGAAAATAT ACTGCAAAGA CTGCAGAGCA TCAGCTCTCA ATAGAAAGGA
  R
  GTTGACATGG ATATAAACCC ACAACCATCA TTTCCTATTA GCTCTGCTAT TTTGTAAATA
  ACTAGCAGGG CAGAAACCTT ATGGGTCTTT TCTTTGAGGT GGGGAGGAGT CCTCTTAATC
  CAGTATTTGC AACTTGCACT GTAGCTTCAA CGATTGTGGC TACATTATTA TTCAATTATA
  ATGTACATAT TCATCTCACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37481216	NES08948024	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27277877					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37481216	NES08948024	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144368208 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12356	CpG island 12356	814 bp proximal
Dzank1	double zinc ribbon and ankyrin repeat domains 1	within coordinates
Polr3f	polymerase (RNA) III (DNA directed) polypeptide F	1457 bp upstream
Rr566471	regulatory region 566471	137 bp distal
Rr566472	regulatory region 566472	571 bp proximal
Rr566473	regulatory region 566473	1100 bp proximal
Rr566474	regulatory region 566474	1471 bp proximal
Tssr20540	transcription start site region 20540	1227 bp upstream
Tssr20541	transcription start site region 20541	1450 bp upstream
Tssr20542	transcription start site region 20542	1503 bp upstream
Tssr26607	transcription start site region 26607	1053 bp downstream
Tssr26608	transcription start site region 26608	1137 bp downstream
Tssr26609	transcription start site region 26609	1151 bp downstream
Tssr26610	transcription start site region 26610	1213 bp downstream
Tssr26611	transcription start site region 26611	1238 bp downstream