rs27277879 SNP Detail

Summary

• ID
  rs27277879
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:144367677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCTGAGGGG CACACACTGA GCCAGCAGTC ATGTTTTCTC
  CTTATAGAAA AAAAATAGAT TAAAAATTTC CATCATGAAC CTATGCCTAA ACACGAAAAC
  M
  ACAGAGTGCT ACTTATTTTA AATGCATTGA AGCCAGAAGA GCATTAAATT AATATGCCAC
  CTACAGATAA CGCCCAGTTT AATTAATGAA ATTATTACA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37481218	NES08948022	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	A	C	A		C	A	C	C	A	C	C	A
ss45364385	mCV22517182	ABI	CRAMUS_MOUSE	f	SNP		A					A	C
ss147798018	ENSMUSSNP4102384	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27277879					SNP	C	A	A	A	C	A	A	C	A	C	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37481218	NES08948022	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144367677 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12356	CpG island 12356	1345 bp proximal
Dzank1	double zinc ribbon and ankyrin repeat domains 1	within coordinates
Polr3f	polymerase (RNA) III (DNA directed) polypeptide F	1988 bp upstream
Rr566471	regulatory region 566471	275 bp proximal
Rr566472	regulatory region 566472	1102 bp proximal
Rr566473	regulatory region 566473	1631 bp proximal
Tssr20540	transcription start site region 20540	1758 bp upstream
Tssr20541	transcription start site region 20541	1981 bp upstream
Tssr26607	transcription start site region 26607	1584 bp downstream
Tssr26608	transcription start site region 26608	1668 bp downstream
Tssr26609	transcription start site region 26609	1682 bp downstream
Tssr26610	transcription start site region 26610	1744 bp downstream
Tssr26611	transcription start site region 26611	1769 bp downstream