rs27284316 SNP Detail

Summary

• ID
  rs27284316
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:134943936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAATAATAT CATTTCTTCT CCACGAAACT CCTAGAAATT
  TTAGCATTTA GAAGATGAGG GAAAATACAG TTGGCTCAGC TGAGGTGCAG CCTCTTGGAG
  M
  TAGTAATTAT GTCCCATCTG TTTGGAGAAA TAAGTTGGCT TTTAAGAGAG TAAATGGGGT
  AACAATTTAA TTAAAGGCAG GTTAGATTAC ATGCAAATTA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ
ss37456345	NES08975379	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ
rs27284316					SNP	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37456345	NES08975379	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:134943936 () rs orientation: forward

Symbol	Name	Function Class
Plcb1	phospholipase C, beta 1	Intron
Rr565720	regulatory region 565720	246 bp distal
Rr565721	regulatory region 565721	within coordinates