rs27284320 SNP Detail

Summary

• ID
  rs27284320
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:134943397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAAAA AAAAAAGAAA
  TGAATGTTGC CACTAAGTTG TCTAAAATCT GCAGGCATTG ACAGAGGGGC AGCTGTGTTC
  TCTTGTGCTT GCCTCCTGAC AAGGAAGTTG GAAAGTTCTT GCTGTGATAA AGAAGCCATG
  TGCCTTTTCT TATGAAAGCC CACACAAAGA CATGCCCCGT GCTGCCAACA CTGGTTCTAG
  K
  GGGACCATTC CCATTCTTTC ACTCTGTTCC CCCCTTCTCT GGTTGTACGC GGGGCCGGCC
  CTCTTGAGAC AGAGGAACTT GCTCCATCTC AACCTACTGT GACTAATGGG GGAAGCATGG
  GCTGGGAAGG AGGGAGTGGA TAATGGATAT TGGTTTTCAT TATCCTGCCA GAGACACTTG
  AATCAATGCA GTTGGCAATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ
ss37456349	NES08975369	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ
rs27284320					SNP	T	T	T	T	T	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37456349	NES08975369	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:134943397 () rs orientation: forward

Symbol	Name	Function Class
Plcb1	phospholipase C, beta 1	Intron
Rr565720	regulatory region 565720	within coordinates
Rr565721	regulatory region 565721	472 bp proximal