rs27284326 SNP Detail

Summary

• ID
  rs27284326
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:134942466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAGTACAA AATAATTTGA
  ACACTTGATA TAAAGATGTG TGGTTCTAGA AAAGTTGAAT GCAAAGCTTT CATTCACCCA
  TCTAATGCCT AAAATACTCG ACTGGTGGTT TACAATGGAA AAAAAGAAAG TGTGGCTGGT
  GTTGACACTT CTTCTGCTTG TCATCAGCAG TGACTCAGTG TGGCATGTTT GGAGTCTCTC
  R
  GGTTGAAGCA AAGATGTTGG GAGAGTCAAG GGTTATATAG ATTCTACTTG AAATGTGCTT
  TTGTTAGATG AGTTTCACAG TATTTTAAAT ATATATATAT GAATTTCTCA ATCTAGCTAC
  CGTTTCATCT CAGGTTGGCA GGGGGCTTGT CCTGTGTCTC TTCCATCTGA CACTCAATCA
  TGGTACAGTC TCACTGGTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ
ss37456355	NES08975407	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ
rs27284326					SNP	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37456355	NES08975407	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:134942466 () rs orientation: forward

Symbol	Name	Function Class
Plcb1	phospholipase C, beta 1	Intron
Rr565720	regulatory region 565720	831 bp proximal
Rr565721	regulatory region 565721	1403 bp proximal