rs27284330 SNP Detail

Summary

• ID
  rs27284330
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:134942179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTGAGATTA AAAGCTTCCA CCACCACAAT TGGCTAGTAT
  TTGGACTTTC TGTACATACA TCTAAATAGT AGGAATTGTG AATTCAGACC CGGGCAGATA
  Y
  GATCAAGGAC ACAAGTGACA CATTTCATTA TATGCTTTCT TCTCTCCTCC CTTTGAATTT
  TGAATCCTGA GAATATTATT TCTCATTTAA GTACAAAAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	SM/J
ss37456359	NES08975403	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C		T
ss320515718	CHEV_2_134925995	CHEVERUD	SCREENING_POP	f	SNP										T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	SM/J
rs27284330					SNP	C	C	C	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37456359	NES08975403	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:134942179 () rs orientation: forward

Symbol	Name	Function Class
Plcb1	phospholipase C, beta 1	Intron
Rr565720	regulatory region 565720	1118 bp proximal
Rr565721	regulatory region 565721	1690 bp proximal