rs27287870 SNP Detail

Summary

• ID
  rs27287870
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:168610822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCACACC TTTCTGGGAA
  AGGAGCAGAG CAGGCGCTAT AACTCACAAA TCTGAAGGAA TGTACAGTTT ACAACTCAAG
  AAAGATGAGC CCTTTAAGGG AAGCATTGTG TAATATGGTT CTGTTCCTTT ATCTAAGTTA
  GTGATAGTTA GGGCATAGCA GCTCTATCTG CCCTGGAATG AGGTGGGGAC CCTTCGGCCA
  S
  GTCAGTCAGG ATAGTAATAA GGAGATGATG AAGATAGCTT TCATAAGGCC AAGGTAGGAA
  GATCTCAAGT TGGAAGGGAG GCCCTGTCTT TTAGAGAGAG AGAGATTAGG AGGAGGAGAA
  AACAGAACAA TAGTTTTTTT ATTTCATTTT AGTTTTAGTT TTTGGGGGAT TTTTGTTTTG
  TTTGAGACAC AGTGTCTCAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37504003	NES08851493	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27287870					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37504003	NES08851493	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:168610822 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12778	CpG island 12778	1694 bp distal
Gm14261	predicted gene 14261	792 bp downstream
Rr56145	regulatory region 56145	1021 bp distal
Rr374246	regulatory region 374246	within coordinates
Sall4	spalt like transcription factor 4	1701 bp upstream
Tssr27878	transcription start site region 27878	1857 bp upstream
Tssr27879	transcription start site region 27879	1837 bp upstream
Tssr27880	transcription start site region 27880	1819 bp upstream
Tssr27881	transcription start site region 27881	1798 bp upstream
Tssr27882	transcription start site region 27882	1751 bp upstream
Tssr27883	transcription start site region 27883	1740 bp upstream
Tssr27884	transcription start site region 27884	1696 bp upstream
Tssr27885	transcription start site region 27885	1605 bp upstream