rs27287871 SNP Detail

Summary

• ID
  rs27287871
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:168610359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCTTCAT TATGAGAGAC
  TGGGCAGACA TCAGCCTCTC CTCCATCTTT CTGCTTTGCA TTTTCTTGAT TAGCTATTTG
  TCGTTTCCTG CTTCTGAGAG GCTGGTGAGG AAGGAAGCGG GAAACAGGAG CCTGACCTCA
  TGAGCATGCT CACCTGTGCC TGTGGACAAC CCAGAGCTGA ATAAGTCAGC TGGACCACAG
  K
  TTTGATATGC GTAGCTAGCA CTGAGCCCTT ACAGAAATGC CTGCTTTCCA GTTCTGGTCT
  TTCTTCTGCA ACGTAGCTTG AATTACTTCG AGCGCAACAT CTAAAAGAAA TAGGACAGCC
  CCTCCTGCCA GCCAGGGTGG CGGCGTGGTG GCCTTGGCGG GGAAGAATCT GTTTTCATGC
  TGCATAAAAG CACTTGAAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37504004	NES08851492	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27287871					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37504004	NES08851492	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:168610359 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12778	CpG island 12778	1231 bp distal
Gm14261	predicted gene 14261	329 bp downstream
Rr56145	regulatory region 56145	558 bp distal
Rr374246	regulatory region 374246	within coordinates
Sall4	spalt like transcription factor 4	1238 bp upstream
Tssr21881	transcription start site region 21881	1889 bp downstream
Tssr27877	transcription start site region 27877	1779 bp upstream
Tssr27878	transcription start site region 27878	1394 bp upstream
Tssr27879	transcription start site region 27879	1374 bp upstream
Tssr27880	transcription start site region 27880	1356 bp upstream
Tssr27881	transcription start site region 27881	1335 bp upstream
Tssr27882	transcription start site region 27882	1288 bp upstream
Tssr27883	transcription start site region 27883	1277 bp upstream
Tssr27884	transcription start site region 27884	1233 bp upstream
Tssr27885	transcription start site region 27885	1142 bp upstream