rs27287873 SNP Detail

Summary

• ID
  rs27287873
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:168609809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCACCTCC CCATCTTACC
  TAATTTCAAG CTCTTCCGAA CCCACCAGGG TTTGCATCCT TAAAATGCTG AGTAATACTC
  GCGGGATTCA TATTCACGAG CCAGGATTTG TTGTAAACTT CCTGGATTTT CGGAAGCACT
  TCTAAACCAC TGTCTGCTAA CTGTAGAAAG GGCAGATGAA AAGCAAACTT GCTAGAAAAC
  R
  ATTCCAGAAT AGCAAGTGGT TGCAGATTCT ATCCCTAAAG CTGTTCAGGG CTCCCAAAAG
  GTACGAGGGT GTTTGTACTT AACTGCTTTC TAGAACACTG CAATACAGAA CTGACTTACA
  GAAAAGCCAC TTCCTCCTGA AGTTGTGTGG TCCTGATTCG GGAATGCCTA GAATTTCCTA
  AAAGGGTGTG TATGGATATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37504006	NES08851490	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27287873					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37504006	NES08851490	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:168609809 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12778	CpG island 12778	681 bp distal
Gm14261	predicted gene 14261	within coordinates
Rr56145	regulatory region 56145	8 bp distal
Rr374246	regulatory region 374246	within coordinates
Sall4	spalt like transcription factor 4	688 bp upstream
Tssr21880	transcription start site region 21880	1742 bp downstream
Tssr21881	transcription start site region 21881	1339 bp downstream
Tssr27877	transcription start site region 27877	1229 bp upstream
Tssr27878	transcription start site region 27878	844 bp upstream
Tssr27879	transcription start site region 27879	824 bp upstream
Tssr27880	transcription start site region 27880	806 bp upstream
Tssr27881	transcription start site region 27881	785 bp upstream
Tssr27882	transcription start site region 27882	738 bp upstream
Tssr27883	transcription start site region 27883	727 bp upstream
Tssr27884	transcription start site region 27884	683 bp upstream
Tssr27885	transcription start site region 27885	592 bp upstream