rs27287874 SNP Detail

Summary

• ID
  rs27287874
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:168609330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTCAGAG ATCATTTAAA
  TAAGCCCTCA TTGATCAGGG AGGGGAGAGG CATGCTGGGC CTTGTAGTCC GGCCCTACAT
  GTGACAAAGG CGTGTTCATC TAGGAAGCAT AGCTAATTAG CATCCGGGCT CAGATTGGCC
  GAGGCGTGGA TCGACTTGGA GGTGGGGGGA ATCATCCTTG CGGCCACTAT CCGAATTCTG
  R
  GACGGAAAAA GGAAAATTGG TTTATTGAAA ATCAGGGCTG GACATGAAAG TTCTAGAACC
  GATGTATCTC GGTTACGCGC TCCACAAAAT TATTGTAGTA ATTGGCGTAG TTGATAACTA
  CCAGCTGAGA AAGGTCTTTC CGCTCACAGA AAAATAAGTC GGTTCAACTT TTCCCTCTAA
  AATCAAACCT GAACAAGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37504007	NES08851489	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27287874					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37504007	NES08851489	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:168609330 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12778	CpG island 12778	202 bp distal
Gm14261	predicted gene 14261	within coordinates
Rr56145	regulatory region 56145	within coordinates
Rr374246	regulatory region 374246	within coordinates
Sall4	spalt like transcription factor 4	209 bp upstream
Tssr21880	transcription start site region 21880	1263 bp downstream
Tssr21881	transcription start site region 21881	860 bp downstream
Tssr27876	transcription start site region 27876	1969 bp upstream
Tssr27877	transcription start site region 27877	750 bp upstream
Tssr27878	transcription start site region 27878	365 bp upstream
Tssr27879	transcription start site region 27879	345 bp upstream
Tssr27880	transcription start site region 27880	327 bp upstream
Tssr27881	transcription start site region 27881	306 bp upstream
Tssr27882	transcription start site region 27882	259 bp upstream
Tssr27883	transcription start site region 27883	248 bp upstream
Tssr27884	transcription start site region 27884	204 bp upstream
Tssr27885	transcription start site region 27885	113 bp upstream