rs27287875 SNP Detail

Summary

• ID
  rs27287875
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:168607496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACCCCAA ATGGAGGGGG
  AAGGGAGGTC ATCGCAGGAC CAGGGGAGGG GTCAGGGCCG AGAGCTCGCC CCTCCTCTCC
  AGAGGAAGCA GGCGGGCTGA GGGTTAACCC TTTTGTTCCA GGTGGACCAA GCGACCCAGC
  CTCTCCATGA TCTGCACCCC CACCCCTAGC TCCCCGGGCC AAGGCACAAA GAGTCCATCC
  S
  AGCTGCCCGG CCCTATGATG TGGGATGCTC CAACGCCCCA AAACTCACAT CCGCCCCCTC
  GAACAAGCAA TGACCTTCCA GTTGCCCTGG GGGGCAGGGG GGGGGGATAC AATGAGGTAG
  AAGGTCACTG AACTTTGATA AACTCGTTAA GTTTGGGAAA AGTAGGATCC CACTCCGGGG
  AAAACAGGAG CGCCCAAGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37504008	NES08851488	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27287875					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37504008	NES08851488	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:168607496 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12778	CpG island 12778	within coordinates
Gm14261	predicted gene 14261	567 bp upstream
Rr40858	regulatory region 40858	496 bp distal
Rr56145	regulatory region 56145	within coordinates
Rr374246	regulatory region 374246	within coordinates
Sall4	spalt like transcription factor 4	within coordinates
Tssr21880	transcription start site region 21880	565 bp upstream
Tssr21881	transcription start site region 21881	968 bp upstream
Tssr27872	transcription start site region 27872	768 bp upstream
Tssr27873	transcription start site region 27873	315 bp upstream
Tssr27874	transcription start site region 27874	261 bp upstream
Tssr27875	transcription start site region 27875	215 bp upstream
Tssr27876	transcription start site region 27876	135 bp upstream
Tssr27877	transcription start site region 27877	1065 bp downstream
Tssr27878	transcription start site region 27878	1460 bp downstream
Tssr27879	transcription start site region 27879	1486 bp downstream
Tssr27880	transcription start site region 27880	1500 bp downstream
Tssr27881	transcription start site region 27881	1515 bp downstream
Tssr27882	transcription start site region 27882	1560 bp downstream
Tssr27883	transcription start site region 27883	1583 bp downstream
Tssr27884	transcription start site region 27884	1614 bp downstream
Tssr27885	transcription start site region 27885	1710 bp downstream