rs27287876 SNP Detail

Summary

• ID
  rs27287876
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:168606993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGATTTAT CTAAACTAAG
  GGTGATCCCA AAATGCAGGC ATTAAAGAAA TTTTAAAACA AAAACAAAAA ACCTCTTCCC
  AAAACCACAA TCGAGGTCCC CCTACAAACA CATTTTAAGA ACTCTTGGAG AAGATTCCCA
  AACACTGATG TTGATGCAGA AGATGGGGAC CCCACAGAGA TCACGCGTGT GCGGGTCTCC
  R
  GCCTAGCTAA CCTCACTCAC CAGGTGTGTG TCGCAGTCCG CACATGGCCG GTCTCCAGAG
  GGCGCCCGCA CGCCAGAGGC CGGGCTCCGA CCGCGAGTGA TCCGCAGAAA ACTCGCTTCC
  CAAGGCTGGG TGGCAGCGCG CGCCCAGCGG CCTCAGGGTG CAGCCAGGTT AACTACGACT
  CCAGCCAGCG GAGATTTCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37504009	NES08851487	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27287876					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37504009	NES08851487	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:168606993 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12778	CpG island 12778			within coordinates
Gm14261	predicted gene 14261			1070 bp upstream
Rr374246	regulatory region 374246			within coordinates
Rr571083	regulatory region 571083			431 bp distal
Rr571084	regulatory region 571084			48 bp proximal
Rr571085	regulatory region 571085			286 bp proximal
Rr571086	regulatory region 571086			570 bp proximal
Rr571087	regulatory region 571087			1946 bp proximal
Sall4	spalt like transcription factor 4			Intron
				Noncoding-Transcript-Variant
Tssr21880	transcription start site region 21880			1068 bp upstream
Tssr21881	transcription start site region 21881			1471 bp upstream
Tssr27872	transcription start site region 27872			265 bp upstream
Tssr27873	transcription start site region 27873			172 bp downstream
Tssr27874	transcription start site region 27874			231 bp downstream
Tssr27875	transcription start site region 27875			262 bp downstream
Tssr27876	transcription start site region 27876			297 bp downstream
Tssr27877	transcription start site region 27877			1568 bp downstream
Tssr27878	transcription start site region 27878			1963 bp downstream
Tssr27879	transcription start site region 27879			1989 bp downstream