rs27289035 SNP Detail

Summary

• ID
  rs27289035
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:168407415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTTCTCT ATCAGGACTC
  AGTCTCCCAG CAACCTGCAG GCCAGGGTCC CCCTCCTCAA GCGACTAAGC CTTGCCAATC
  ATAACAGACT TTTTTCTTTT TACAAAAAGT TGTCTTAAGG GATGGTAAAA TAGCTGGTGG
  CTAAGCAGCC TCCCTGCCAC AGAGACTCAA AACTAGACTA AAAGTCACAA AGCCACCGAC
  W
  GTTGTCAATG ACAGCACACA ATGGACTGTG GTCCCGAGGG CAGGGATGCC CACGAGGCAG
  GTTGGGGTCC TGCGGGAAGG GATGCCCATG AGACAGGTCA GTGCGTGTTT GCTTCTCTTC
  CAGCCCTGGA GCTAAAGATC CAACATTGTG GAGCCCCTCT GAGCCAATAG GGTAGACTTC
  AGCCTCTCTG GCTGCTGCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37504657	NES08836410	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27289035					SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37504657	NES08836410	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:168407415 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm74616	predicted gene, 74616			64 bp upstream
Nfatc2	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2			Intron
				Noncoding-Transcript-Variant
Rr571014	regulatory region 571014			1569 bp distal
Rr571015	regulatory region 571015			1164 bp distal
Rr571016	regulatory region 571016			105 bp proximal