TGTGGCTTCA GTGTCCATGA GGATTTTGCC ACACGTGCCC CTCCCCCTGC CTGAATAAAA GCAGCTCATC TATAGACTTC TGTATGGTCA GCATGCATTA R TATAGTCAAT ACTGCGCTTT GGTTGATAAG TGAGGTGTGT GTGTGGGGGG GCTAGAGGTT GATGTCTGGT GTCTTCCTTA TTACTTCTCC ACAAAATTA R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37508027 | NES08839209 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | A | A | G | A | G | A | A | A | G | A |
SNP Consensus Information | ||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs27290004 | SNP | A | A | A | A | A | G | A | G | A | A | A | G | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37508027 | NES08839209 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr2:167226796 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Rr397506 | regulatory region 397506 | 859 bp downstream | ||||||
Rr570569 | regulatory region 570569 | 528 bp distal | ||||||
Tssr21804 | transcription start site region 21804 | 803 bp downstream | ||||||
Tssr21805 | transcription start site region 21805 | 780 bp downstream | ||||||
Tssr27773 | transcription start site region 27773 | 1304 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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