rs27290007 SNP Detail

Summary

• ID
  rs27290007
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167226467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGTTTTTC CAGACAGGGT
  CTCTCTGTAT AGCCCTGGCT GTCCTGGACT TTGCTCTGTA GAGCAGGCTG GCCTCTCTCT
  GCATCCCCAG TGCTAGGATT GAAGGTGGGT GCTACTACAG CCTGGCTCAC AATAAGATTG
  AAAACGAGCA CCATTGTCAA ATAGCATGCT GATGTTTGGG ATCTGTCTAG CACCATCTCC
  R
  TAGGAGGCCG CTCCTCCTCA TGAGCAGGTG GCCTGCTGTA CTACACATAC CTACATAACA
  TACTGCATAC ATTGCCCGTG GTCCTGTTCT AGGGGTGACT TAGGGACCAT CTTGGGTACA
  GACCGACTCC TGGAGTCCCA GGCTGTTCTT AAGATCATTC TCCTCTGGGG TTTGCTCCCT
  TAGTGCCGCG CGGGGTCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37508030	NES08839205	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27290007					SNP	G	G	G	G	G	G	G	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37508030	NES08839205	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167226467 () rs orientation: forward

Symbol	Name	Function Class
Rr397506	regulatory region 397506	530 bp downstream
Rr570569	regulatory region 570569	199 bp distal
Tssr21804	transcription start site region 21804	474 bp downstream
Tssr21805	transcription start site region 21805	451 bp downstream
Tssr27773	transcription start site region 27773	975 bp upstream