rs27290008 SNP Detail

Summary

• ID
  rs27290008
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167225689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACAGTAAG ACCCTGTCTA
  AAATATAAAG TCGCCTAGCA CCCGAAGGAA CTAGAAGACC AGCTAACTCC ATACAAATTT
  AGCAAAAGAA ATGATATCAT ACATTAGGTC ATGGCAACCA CAGGCCACCA GCCAGCAGGA
  ACCAGTGGGC AGCCGCTGTC TACTAACGTC TCCAGAGCAC GTCGACTTTG GTAGCAGGAG
  Y
  GAACCTTCTG GTCATATCTG ACCTGCTGTT CAGCAAAAGC CCCATGAGTC ATTCCCCAAG
  GTCCCTGGGG AGGAAAAGGC ATCAGATAAG GGACCCGTTC TGGGAAGATT TAAAACCTTG
  GCGCGTGGCC CTGGTTTCCG GGGAAAGTTA TTGGCCTTCT AGGTGGGGTC ACCTTGAACG
  CTCTGCCCCG TAGTCTCTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37508031	NES08839243	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27290008					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37508031	NES08839243	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167225689 () rs orientation: forward

Symbol	Name	Function Class
Rr397506	regulatory region 397506	within coordinates
Rr570568	regulatory region 570568	1678 bp distal
Rr570569	regulatory region 570569	within coordinates
Tssr768	transcription start site region 768	1765 bp downstream
Tssr21803	transcription start site region 21803	1871 bp downstream
Tssr21804	transcription start site region 21804	293 bp upstream
Tssr21805	transcription start site region 21805	315 bp upstream
Tssr27773	transcription start site region 27773	197 bp upstream