rs27290009 SNP Detail

Summary

• ID
  rs27290009
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167225656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCATACAAA TTTAGCAAAA GAAATGATAT CATACATTAG
  GTCATGGCAA CCACAGGCCA CCAGCCAGCA GGAACCAGTG GGCAGCCGCT GTCTACTAAC
  R
  TCTCCAGAGC ACGTCGACTT TGGTAGCAGG AGCGAACCTT CTGGTCATAT CTGACCTGCT
  GTTCAGCAAA AGCCCCATGA GTCATTCCCC AAGGTCCCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37508032	NES08839240	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	G	G	G	A	G	G	G	G	G	G	G
ss148262615	ENSMUSSNP2675295	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27290009					SNP	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37508032	NES08839240	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167225656 () rs orientation: forward

Symbol	Name	Function Class
Rr397506	regulatory region 397506	within coordinates
Rr570568	regulatory region 570568	1645 bp distal
Rr570569	regulatory region 570569	within coordinates
Tssr768	transcription start site region 768	1732 bp downstream
Tssr21803	transcription start site region 21803	1838 bp downstream
Tssr21804	transcription start site region 21804	326 bp upstream
Tssr21805	transcription start site region 21805	348 bp upstream
Tssr27773	transcription start site region 27773	164 bp upstream