rs27290011 SNP Detail

Summary

• ID
  rs27290011
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167225209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTAGCCCTC ACCTCAGAAG GGAAGTTGAA TTCTGGGTAC
  GTAGTCTACG ACAAGAGCCA CCAAGAGCTG CTATCTCTTC TTCATCTCAG CACAGCCTCT
  W
  CTCTAGCTAC AGGCCGGTGG ACCTCTGTGT TCTAGCCAAC ATCCTAAACT CACTGTCATC
  TCCCCCAAGA TGTTTATAGA TGGAAACGAT CATGTTAGC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37508034	NES08839285	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	T	T	T	A	A	A	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27290011					SNP	T	T	A	T	T	T	A	A	A	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37508034	NES08839285	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167225209 () rs orientation: forward

Symbol	Name	Function Class
Rr397506	regulatory region 397506	427 bp upstream
Tssr768	transcription start site region 768	1285 bp downstream
Tssr21803	transcription start site region 21803	1391 bp downstream
Tssr21804	transcription start site region 21804	773 bp upstream
Tssr21805	transcription start site region 21805	795 bp upstream
Tssr27773	transcription start site region 27773	270 bp downstream