rs27290013 SNP Detail

Summary

• ID
  rs27290013
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167224863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGTGGCAG CAAGGATGGC TGTGAATTCT ACCTAAGAGT
  AGGGGAGGGG GAGCAAAATA AAGGGCTGCT CTCTCCTTCC AGAGCACAGC CTCCCTCTCC
  K
  CAAACCTGGG GAAGGAGGAC TTCTCATTCT TCCCAAAGAC CCGGGAGCTG AGAAAGTAGA
  AGGCCGTGTG TCTGTCTAGG GATCACTTCA CACCGTCCT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37508036	NES08839280	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	G	T	T		T	T	T	T
ss148262601	ENSMUSSNP3718456	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		G			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27290013					SNP	T	T	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37508036	NES08839280	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167224863 () rs orientation: forward

Symbol	Name	Function Class
Rr397506	regulatory region 397506	773 bp upstream
Rr570567	regulatory region 570567	1710 bp distal
Rr570568	regulatory region 570568	852 bp distal
Rr570569	regulatory region 570569	513 bp proximal
Tssr768	transcription start site region 768	939 bp downstream
Tssr21803	transcription start site region 21803	1045 bp downstream
Tssr21804	transcription start site region 21804	1119 bp upstream
Tssr21805	transcription start site region 21805	1141 bp upstream
Tssr27773	transcription start site region 27773	616 bp downstream