rs27290659 SNP Detail

Summary

• ID
  rs27290659
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:131798781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGCCCTG TCGCAGAAGC
  CATCCTTTCC TCTCAGCTTA GGCAAAACAC CAGCTTCTCT CTCAAGACCC TTGTGCCCCA
  CATGACCCAG AAGGCACCTG CCAGCCTCCA GAACACCCAC CTGTGAGCTT TGTGAGATGT
  GCCCTTAGCA ATGGTTATGG CACTTCCTAT CTCAACTCTC TAACTGCCAG TAACTGGCCT
  R
  GGTGGTGGCT CAGTGAATCA GGGACCTCAA GGCCTACTCC ACTTGTAGTA TGGACATCTA
  AACCTTTCTA CCCAGACCCT TCTCCACTGT GTAAGGCTAG ACAAGGGTGC CCTAATGTGC
  TGGATATTCT CACATGCCAC ATTATGAAGT CTACCAGGCT CTGTACTGTG ACATGTTCCC
  CACCACCACC TTTATTGTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37467383	NES08995174	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27290659					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37467383	NES08995174	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131798781 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12298	CpG island 12298	1296 bp distal
Prn	prion protein readthrough transcript	731 bp downstream
Prnd	prion like protein doppel	731 bp downstream
Rr373880	regulatory region 373880	455 bp downstream
Tssr26420	transcription start site region 26420	1853 bp upstream