rs27293909 SNP Detail

Summary

• ID
  rs27293909
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:131957414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTCTCTA AAGCATGCGC
  AGCAGCAGGC GACTGAAGTA AGGTAATCCA GTGGGAAAAA ACCTGCTTGC TCTGCGCGAT
  GCCCCCTCCT GTAGGCACCT ACTTCATTTC TAGTAATCAA ACAGGATACT TCAAATTAAC
  CTGTATTCAA AACCTGTAAG GGAAGAGGGG GTCACAGCTG TGGGTATATA GCGTTGTTCA
  W
  TGAGGTGACT ACTGCATAAT CTCACATAAT CTCGCTGTGA TGTCTACAGA CATCGACCTT
  CAGCCTACAC CAGGTGGGAG GGCAGGAAGT TGGGGGAGGG TGGTATACCT GACGACTTAA
  TGACCTAGAA CATGAAGGCC AGGGTTGAGG TAGCAGACTA ATGGAATGTT ATACAAGCTG
  TAGGGGAAGG AAACTTAATA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37466349	NES08991758	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27293909					SNP	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37466349	NES08991758	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131957414 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr565401	regulatory region 565401			1233 bp distal
Rr565402	regulatory region 565402			1318 bp distal
Rr565403	regulatory region 565403			684 bp distal
Slc23a2	solute carrier family 23 (nucleobase transporters), member 2			Intron
				Noncoding-Transcript-Variant
Tssr26455	transcription start site region 26455			883 bp upstream