CTTCTGATGC TGACTCACAC AGCAACTTCT GTCTTATTAA CAGGTGACTC CTTACCTCTC ATTCAATTAA TAACTCAACC AGCACCTGGC TGTGCAGCCC AGCCAGCGTT CCCCAGCGCA TCACAGAGCT AGACACAGCC CGTCCTGGGC GATGGGCTGG CTGAGGGAGA AAAGAAAGCC TCTCCTTCTT CCTGTGACTG S AGGGACCATC TAGTTCTAAA CAGTGTGTTT AAAAGAAGAA GAAGGGTGTG GTGGCAGACT GTGAAAAAGA AGTTTCTGTT TCATTATTAG GACATATTAA ACCCCAAACT ACTCCCCACC CACACACGTG CAGAGATATT TTATACAAAG CCATCTGCAG GCCACGGGTT TAATCCCAGC ACAGCAGAAA ATAAAAGAAG S = C/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37466355 | NES08991749 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | C | C | C | C | C | C | C | C | G | C | C | G |
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs27293915 | SNP | C | C | C | C | C | C | C | C | C | C | G | C | C | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37466355 | NES08991749 | PERLEGEN | MM_PANEL | f | SNP | C/G |
Location: Chr2:131956514 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Rr565400 | regulatory region 565400 | 1955 bp distal | ||||||
Rr565401 | regulatory region 565401 | 333 bp distal | ||||||
Rr565402 | regulatory region 565402 | 418 bp distal | ||||||
Rr565403 | regulatory region 565403 | within coordinates | ||||||
Slc23a2 | solute carrier family 23 (nucleobase transporters), member 2 | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Tssr26455 | transcription start site region 26455 | 3 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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