rs27293928 SNP Detail

Summary

• ID
  rs27293928
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:131954709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATCACTAG AACTTCAGAC
  CTGAAGGATC CAATGCCCTC CTCTGGCCTC TATGATGACT TCATAGGACA GGGATACACA
  CACACACACA CACACACACA CACACACACA CACACAGATG GACACAGAGA GAGACAGACA
  GACAAAACAC ATCTAAGCAT AAAATTAAAT AGACCTTGAA GAAACAAAAA TGGTACAAAT
  R
  AACTATGATA CTCCCACAGC CTAACACAAA CCTGCCTCAC AGGATTTCCC ACCGGCTAGA
  CCCACACTGC ACCTGTGTCG AGGGAAGAGC TGTGCGTGCA GGCAGAGCAC TCCTGTTAAT
  CTCTACAGTG GGACTCCTGT GCTGTTCATG TTTGCCTGTA TTTAAGCTCT ACTTATGTCT
  CTCTCAGTGT AGTAAGAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37466368	NES08991768	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27293928					SNP	A	A	A	A	G	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37466368	NES08991768	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131954709 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr397328	regulatory region 397328			1052 bp downstream
Rr565399	regulatory region 565399			991 bp distal
Rr565400	regulatory region 565400			150 bp distal
Rr565401	regulatory region 565401			1000 bp proximal
Rr565402	regulatory region 565402			1366 bp proximal
Rr565403	regulatory region 565403			1585 bp proximal
Slc23a2	solute carrier family 23 (nucleobase transporters), member 2			Intron
				Noncoding-Transcript-Variant
Tssr26451	transcription start site region 26451			1324 bp upstream
Tssr26452	transcription start site region 26452			1311 bp upstream
Tssr26453	transcription start site region 26453			1281 bp upstream
Tssr26454	transcription start site region 26454			435 bp upstream
Tssr26455	transcription start site region 26455			1808 bp downstream