rs27294607 SNP Detail

Summary

• ID
  rs27294607
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147217044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGG ATGCACACGA TCAGAGGATG
  W
  GTTCTTGATT TTCTTGGGTA CTCAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37496527	NES08932264	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	T	A	T		T	A	A		T
ss147887034	ENSMUSSNP572395	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T
ss320550016	CHEV_2_147200860	CHEVERUD	SCREENING_POP	f	SNP									T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27294607					SNP	A	A	T	T	T	T	A	T	T	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37496527	NES08932264	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147217044 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12389	CpG island 12389	1227 bp distal
Pax1	paired box 1	72 bp downstream
Rr39113	regulatory region 39113	1957 bp proximal
Tssr20631	transcription start site region 20631	1261 bp downstream
Tssr20632	transcription start site region 20632	1205 bp downstream
Tssr20633	transcription start site region 20633	1169 bp downstream
Tssr20634	transcription start site region 20634	1076 bp downstream
Tssr20635	transcription start site region 20635	404 bp upstream