rs27294610 SNP Detail

Summary

• ID
  rs27294610
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147216465 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGCCCTTAA TCATATATTT TTATAGTAAC AAACAAGAGT
  ACAACTTCCT TGGATTGCTG CCCCTACCCC AAGAATATTG TTTGGAAACC TTTTGTTTTT
  S
  TGTGCCCAGT GACTAGGCTG GCTTTGTTTC TACGTTAATG TCACCCAAAA GAAGACAGGA
  CAGGAGAAAG AGATGCTGGG ACTGGTGTTG GGACTGGTGG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ
ss37496530	NES08932258	PERLEGEN	MM_PANEL2	f	SNP	C	G	G	C	C	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ
rs27294610					SNP	C	G	G	C	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37496530	NES08932258	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147216465 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12389	CpG island 12389	648 bp distal
Pax1	paired box 1	within coordinates
Tssr20631	transcription start site region 20631	682 bp downstream
Tssr20632	transcription start site region 20632	626 bp downstream
Tssr20633	transcription start site region 20633	590 bp downstream
Tssr20634	transcription start site region 20634	497 bp downstream
Tssr20635	transcription start site region 20635	983 bp upstream