rs27294611 SNP Detail

Summary

• ID
  rs27294611
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147215978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGGA GAGAGACTCC TGCATCCACC
  K
  CAATTTATTT TTGTTTTGTC TTTTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	DBA/2J	PWD/PhJ
ss37496531	NES08932352	PERLEGEN	MM_PANEL2	f	SNP	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	DBA/2J	PWD/PhJ
rs27294611					SNP	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37496531	NES08932352	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147215978 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12389	CpG island 12389	161 bp distal
Pax1	paired box 1	within coordinates
Tssr20631	transcription start site region 20631	195 bp downstream
Tssr20632	transcription start site region 20632	139 bp downstream
Tssr20633	transcription start site region 20633	103 bp downstream
Tssr20634	transcription start site region 20634	10 bp downstream
Tssr20635	transcription start site region 20635	1470 bp upstream