rs27294612 SNP Detail

Summary

• ID
  rs27294612
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:147215803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCATCCCAGC CTCGACCTCC TAGGGGCTGT CCTCTCACAG
  AGCCACAGCC CGGTTCAGAG GAGCCGGCCG GGAGTGCAGC TCAGCTCATT CGACCTCTGC
  M
  CCTCTGCGCT AGCAGCATCC TGGAGTTGGG GCCCCGGCAT TGCTTTGGTC TCAACAGTTC
  CGCCGGTGCT TCCTTCAGGA AACCCTGGAA TTTTTTAGGT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37496532	NES08932351	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27294612					SNP	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37496532	NES08932351	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147215803 () rs orientation: forward

Symbol	Name	Function Class
Pax1	paired box 1	mRNA-UTR
Rr566789	regulatory region 566789	1674 bp distal
Rr566790	regulatory region 566790	within coordinates
Rr566791	regulatory region 566791	417 bp proximal
Tssr20631	transcription start site region 20631	20 bp downstream
Tssr20632	transcription start site region 20632	26 bp upstream
Tssr20633	transcription start site region 20633	64 bp upstream
Tssr20634	transcription start site region 20634	152 bp upstream
Tssr20635	transcription start site region 20635	1645 bp upstream