rs27294619 SNP Detail

Summary

• ID
  rs27294619
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147214865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTGTACA GTCATAACTG
  TGCTTAGTAA AGTGAACTGA GAGGTGGGGG TATCGCCTGG AGGACTTTGG TCGGGACTGT
  CTGTATATCT ATCTCTTTAA ATATTGCACT AACCTGGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTACTG TTACTTCAAA GTTGCCTGGA GCTGGCAAAT
  S
  AGAGTTCCCC CTCAACGAAT TGGAATTGAT GCGTTAGAGA GTGGCTTTTT GTGAGAGGAG
  GGAAAGAAAA TCGAAAACCC CCCGTCAGAG ATAATTTGTT TTTGCCTCCT GGTGCGAGGA
  AAAGCTGCAC AGCCAGCCGG ATCCGGGTTC TGGGGAAAGG AAAAATAGGA TTGCACAATC
  GTGGCGTCAC TTTCTGGCTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37496539	NES08932344	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27294619					SNP	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37496539	NES08932344	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147214865 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12389	CpG island 12389	302 bp proximal
Pax1	paired box 1	within coordinates
Tssr20631	transcription start site region 20631	903 bp upstream
Tssr20632	transcription start site region 20632	964 bp upstream
Tssr20633	transcription start site region 20633	1002 bp upstream
Tssr20634	transcription start site region 20634	1090 bp upstream