rs27294623 SNP Detail

Summary

• ID
  rs27294623
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147214598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTG CCTGAGAAGC CTTCGCCTCA
  S
  ATGTTTTAAA AACAGGTCCT CACTT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37496543	NES08932340	PERLEGEN	MM_PANEL2	f	SNP	C		G	G		C	C	C		G	C	C		G
ss45246513	mCV22903179	ABI	CRAMUS_MOUSE	f	SNP		C	G		C		C
ss320549981	CHEV_2_147198414	CHEVERUD	SCREENING_POP	f	SNP									G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27294623					SNP	C	C	G	G	C	C	C	C	G	G	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37496543	NES08932340	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147214598 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12389	CpG island 12389	569 bp proximal
Pax1	paired box 1	within coordinates
Tssr20631	transcription start site region 20631	1170 bp upstream
Tssr20632	transcription start site region 20632	1231 bp upstream
Tssr20633	transcription start site region 20633	1269 bp upstream
Tssr20634	transcription start site region 20634	1357 bp upstream