rs27298356 SNP Detail

Summary

• ID
  rs27298356
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165468282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCACACACC CTAATAGTGC
  TGCTCCCTGT GGGCCAAGCA TTCAAACACA CAAGTCTATG GGAGTCATTC CTACTCAAAC
  TAGCACACAT ACCCAAAAGT GTCAATAAAA TGGCCACAGT GTGAGGCTCT GACTAAGTGA
  ACGTGGGAAC AGTTGATCCC ATTTCAAAAC AGGACCATGG GCCTTAGATG ACCAGCTCCA
  Y
  TCAGAGGAAC AACCAGAGAG AGGAGCAGAG ACGTGCTCCA AGAGACAGAG GAGGCACAGA
  GGAGACACCA CCAGCAGTGT CCCCAGGACC AGCAAAGAAG GCGACTTTCC CTGAGCCTGA
  GGACAGCTGA GAGGGAGAAA GAGTCCGAGC CCAGGAGCAG TGTTGGTGTG AAGGAACTGC
  CTGAGCAGAG GCCTAAAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37513676	NES08882121	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T		T	T	T	C		T
ss320608500	CHEV_2_165451862	CHEVERUD	SCREENING_POP	f	SNP									T					C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27298356					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37513676	NES08882121	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165468282 () rs orientation: forward

Symbol	Name	Function Class
Eya2	EYA transcriptional coactivator and phosphatase 2	Intron
Rr569965	regulatory region 569965	523 bp proximal
Rr569966	regulatory region 569966	1586 bp proximal
Rr569967	regulatory region 569967	1700 bp proximal