rs27299553 SNP Detail

Summary

• ID
  rs27299553
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164475889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACGGTGTC TGTCTCAGGG
  TTCTTTTTGC CCCGTGCTCC TTCCTAACCC AATTCCTCAC TCAATCTTAT CCTTGCCCTG
  AGATGAGTGG CATCTTTCAA GAAGCTCCTT CCTAACCCAA TTCCTCACTC AATCTTATCC
  TTGCCCTGAG ATGAGCGGCA TCTTTCAAGA AGCTCAAATG CTGCACGGTG AGAGGTTTAG
  Y
  GTAGGGTCTG TAGTCCATTC CGCACCAGCT TGCTTAGTGG ACTCGTGTAG GCTCATCCAC
  CAGTTTGTGC ATATTTATGC TCCTTTACTA TTTTTTTAAA ACCTATTTAT TTGTTGTTAT
  TTTATGTATA CAAGTGTTTT ACCGGGATGT AGGTATAGGC AACATGTGCA TGCAGTGGCC
  AGGAGACCAG AAGAGGGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37516673	NES08882302	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27299553					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37516673	NES08882302	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164475889 () rs orientation: forward

Symbol	Name	Function Class
Gm74576	predicted gene, 74576	1640 bp upstream
Rr40355	regulatory region 40355	1312 bp proximal
Rr52775	regulatory region 52775	1294 bp proximal
Wfdc16	WAP four-disulfide core domain 16	738 bp downstream