rs27299559 SNP Detail

Summary

• ID
  rs27299559
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164475585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGA TGAGTGTACT GTCCACCAGC
  R
  TTGCCCTCAC TGAGTTCTTT CTAAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	KK/HlJ
ss37516679	NES08882296	PERLEGEN	MM_PANEL2	f	SNP	A			G		G
ss148229596	ENSMUSSNP361073	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	KK/HlJ
rs27299559					SNP	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37516679	NES08882296	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164475585 () rs orientation: forward

Symbol	Name	Function Class
Gm74576	predicted gene, 74576	1944 bp upstream
Rr40355	regulatory region 40355	1616 bp proximal
Rr52775	regulatory region 52775	1598 bp proximal
Wfdc16	WAP four-disulfide core domain 16	1042 bp downstream