rs27303550 SNP Detail

Summary

• ID
  rs27303550
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:160610441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTGACAG TGGCACTGAC
  TGAGCTGCTC CACTCTGAGG GTTTTGGTCC ACGTAGAAAC TAGGAAGACA AAAGGTAATG
  GCTCAAGATA GGGACAGCTC AACACTCACC TAGAGGACAA AACGAGTCTC CAACCAGCAA
  GGTTGCTCCC TCATCCCTAC CCTCCACAGG AGGCAGCTGT GTGACAGATG TCCTAGGGCC
  R
  GCAGGGAGGA AGGGACACAG GTATGACATA GCTACTGTCA GAACAAGTAA AATCTCTGAG
  AGCCATCTGG GTCTGGAGAA TGCAGCTGAG CTTCCTGGTA GCACATACCC AAGGGCAGCT
  GGAGAGAGAC TTAGGATACA GGTAGCTACC TACCAGGTCC CACCCAACTC TCCTTGTGCT
  TCCAGAGGGG AGGGTGCCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37532470	NES08872537	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27303550					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37532470	NES08872537	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:160610441 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Plcg1	phospholipase C, gamma 1			Intron
Rr569070	regulatory region 569070			1618 bp distal
Tssr27247	transcription start site region 27247			1433 bp downstream
Zhx3	zinc fingers and homeoboxes 3			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant