rs27303551 SNP Detail

Summary

• ID
  rs27303551
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:160610361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGTGGCT TTAGTAAAAA
  CACAAATTCT AAGTTTTGTT TTAGGATTTC CTTGGCCGGC TTCCCAGAAA GTGCCTTTGG
  GCTGTGACAG TGGCACTGAC TGAGCTGCTC CACTCTGAGG GTTTTGGTCC ACGTAGAAAC
  TAGGAAGACA AAAGGTAATG GCTCAAGATA GGGACAGCTC AACACTCACC TAGAGGACAA
  M
  ACGAGTCTCC AACCAGCAAG GTTGCTCCCT CATCCCTACC CTCCACAGGA GGCAGCTGTG
  TGACAGATGT CCTAGGGCCA GCAGGGAGGA AGGGACACAG GTATGACATA GCTACTGTCA
  GAACAAGTAA AATCTCTGAG AGCCATCTGG GTCTGGAGAA TGCAGCTGAG CTTCCTGGTA
  GCACATACCC AAGGGCAGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37532471	NES08872536	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27303551					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37532471	NES08872536	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:160610361 () rs orientation: forward

Symbol	Name	Function Class
Plcg1	phospholipase C, gamma 1	Intron
Rr569070	regulatory region 569070	1538 bp distal
Tssr27247	transcription start site region 27247	1513 bp downstream