rs27303552 SNP Detail

Summary

• ID
  rs27303552
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:160610217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGAAAAGGC TTCAGTCTAG
  TATAAGAAAA ACCAGGCAGC ATGCCAAAAT TTGGATAGGA TGAGCTGACC AAAGACCTTT
  ATGTATCTAG AAGACTACTG CAGAAAACAG AGCCTTACAA ATGAATATGA TAGAACTTCA
  TCTGCAAAGT GGCTTTAGTA AAAACACAAA TTCTAAGTTT TGTTTTAGGA TTTCCTTGGC
  Y
  GGCTTCCCAG AAAGTGCCTT TGGGCTGTGA CAGTGGCACT GACTGAGCTG CTCCACTCTG
  AGGGTTTTGG TCCACGTAGA AACTAGGAAG ACAAAAGGTA ATGGCTCAAG ATAGGGACAG
  CTCAACACTC ACCTAGAGGA CAAAACGAGT CTCCAACCAG CAAGGTTGCT CCCTCATCCC
  TACCCTCCAC AGGAGGCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37532472	NES08872535	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27303552					SNP	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37532472	NES08872535	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:160610217 () rs orientation: forward

Symbol	Name	Function Class
Plcg1	phospholipase C, gamma 1	Intron
Rr569070	regulatory region 569070	1394 bp distal
Tssr27247	transcription start site region 27247	1657 bp downstream