rs27303557 SNP Detail

Summary

• ID
  rs27303557
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:160608731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCTGGCA AAGCTGAACA
  AAGCCAGCTA CTCAGAAGCA TGGGAGAGAG ACCAGTGCCC TGAGTGACCA CTCCTGCCCT
  CGGCCCACCC ATTTCACAGA GCAACCTAAC TTGTGCTGGA ATCCTGCTAA GGAATGGGAG
  TTCGCTCTCA CTGCAGCCAG CCTTCTCATA TGGGGCTACA AGAACAAGAC CAAGATGTGT
  R
  GACAGGAGCT AGGGGCAAGA TCTTTCCGAA GCACTAACTG CAGGTTAGCA GGACCACGTA
  ATAGACTTCC GCCCACTGGA CATGTCTCTT CTGGTGCTTG TTTGGGGGAG AACAGAGCAC
  TGGCAGCCCT TTTTATATTC AGTGATTGAG CAGGCTTTAT CCTAGGCAGT TTACCTTCAA
  CTCAAGTTCT GAATAAACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37532477	NES08872603	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27303557					SNP	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37532477	NES08872603	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:160608731 () rs orientation: forward

Symbol	Name	Function Class
Plcg1	phospholipase C, gamma 1	Intron
Rr569070	regulatory region 569070	within coordinates