rs27303948 SNP Detail

Summary

• ID
  rs27303948
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158101686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTGCCTGTT AATTGGTGCT GTTAGCCACA TGATCACTGG
  TAGCAGAATT CCTGCCTCTG GGACATTCAT TTATTTACCC AACAAATAGT ACATGCCGGG
  Y
  ACCACGGTAA ATACCAGAGA CACACTGATA CATAAAAGCT GGCATGGCAC CAACTTCGGG
  AGATGTCCAT TTAGCAAGGG AGCGTGACAT CAATCAGAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37543567	NES08892283	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C			C	C		C	C	T	C		T
ss45381303	mCV22928876	ABI	CRAMUS_MOUSE	f	SNP		T	C					C	T
ss148112349	ENSMUSSNP2135511	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
ss320588305	CHEV_2_158085502	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27303948					SNP	T	T	C	C	C	C	C	C	T	C	C	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37543567	NES08892283	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158101686 () rs orientation: forward

Symbol	Name	Function Class
Bpi	bactericidal permeablility increasing protein	within coordinates
Cpgi12591	CpG island 12591	1584 bp distal
Gm34571	predicted gene, 34571	1722 bp upstream
Rr568713	regulatory region 568713	1662 bp distal
Rr568714	regulatory region 568714	1013 bp distal
Rr568715	regulatory region 568715	748 bp distal
Tssr727	transcription start site region 727	1547 bp downstream
Tssr21302	transcription start site region 21302	1657 bp downstream
Tssr21303	transcription start site region 21303	1557 bp downstream
Tssr21304	transcription start site region 21304	1534 bp downstream
Tssr21305	transcription start site region 21305	1520 bp downstream
Tssr21306	transcription start site region 21306	1490 bp downstream
Tssr27222	transcription start site region 27222	803 bp upstream