rs27303949 SNP Detail

Summary

• ID
  rs27303949
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158101261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGTACATA CATGTCACAT GAGTGCATGG GTGACTGACA
  GCTTTTGTGG GAGCAGAGGC TCAGCTCCAG TGTCCCATGT GGCAACTGGA GTGAGTTTTT
  W
  AAAAATGCAG CAAGCCTATT ATTCATTTGT ATGCCCACAT CCAAAGGTTG AACTTGGGGA
  ACAAGAAGCC TTGATCTCCC ATCTTGACTC TACCATATG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37543568	NES08892374	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	A	A	A		A	A		A	A	T	A		T
ss45200580	mCV22928875	ABI	CRAMUS_MOUSE	f	SNP		T	A					T
ss148112344	ENSMUSSNP5907052	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A					T
ss320588304	CHEV_2_158085077	CHEVERUD	SCREENING_POP	f	SNP											A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27303949					SNP	T	T	A	A	A	A	A	T	A	A	A	A	A	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37543568	NES08892374	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158101261 () rs orientation: forward

Symbol	Name	Function Class
Bpi	bactericidal permeablility increasing protein	within coordinates
Cpgi12591	CpG island 12591	1159 bp distal
Gm34571	predicted gene, 34571	1297 bp upstream
Rr568713	regulatory region 568713	1237 bp distal
Rr568714	regulatory region 568714	588 bp distal
Rr568715	regulatory region 568715	323 bp distal
Tssr727	transcription start site region 727	1122 bp downstream
Tssr21302	transcription start site region 21302	1232 bp downstream
Tssr21303	transcription start site region 21303	1132 bp downstream
Tssr21304	transcription start site region 21304	1109 bp downstream
Tssr21305	transcription start site region 21305	1095 bp downstream
Tssr21306	transcription start site region 21306	1065 bp downstream
Tssr27222	transcription start site region 27222	378 bp upstream