rs27303952 SNP Detail

Summary

• ID
  rs27303952
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158101093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGGGGCGGG GCAGGTCCCA GGGGATCTGC TTTCCTATCC
  CAGAACGCAT GTTCCAGGCC ATGCAGGCCA TCGCAGGGAT GCAAACAGAT TCCCCCATGA
  R
  CGTCGATGAG GATATGGTTG TGTTTAAATC CAGAGCTGGT GTGTGTGTGT GTGTGTGTGT
  GCGCGCGTGT GTACATACAT GTCACATGAG TGCATGGGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37543571	NES08892371	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A			A	G		G	A	G	G		G
ss45350766	mCV22928858	ABI	CRAMUS_MOUSE	f	SNP		G	A					A	G
ss148112329	ENSMUSSNP5016803	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						G
ss320588301	CHEV_2_158084909	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27303952					SNP	G	G	A	A	A	A	A	A	G	A	G	A	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37543571	NES08892371	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158101093 () rs orientation: forward

Symbol	Name	Function Class
Bpi	bactericidal permeablility increasing protein	within coordinates
Cpgi12591	CpG island 12591	991 bp distal
Gm34571	predicted gene, 34571	1129 bp upstream
Rr568712	regulatory region 568712	1883 bp distal
Rr568713	regulatory region 568713	1069 bp distal
Rr568714	regulatory region 568714	420 bp distal
Rr568715	regulatory region 568715	155 bp distal
Tssr727	transcription start site region 727	954 bp downstream
Tssr21302	transcription start site region 21302	1064 bp downstream
Tssr21303	transcription start site region 21303	964 bp downstream
Tssr21304	transcription start site region 21304	941 bp downstream
Tssr21305	transcription start site region 21305	927 bp downstream
Tssr21306	transcription start site region 21306	897 bp downstream
Tssr27222	transcription start site region 27222	210 bp upstream