rs27303953 SNP Detail

Summary

• ID
  rs27303953
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158100754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCAGGCAGG GGGTGCCGGG GGGCGCCTCC AGTGAGATGT
  ACACACACTG CGGGCAGACT CTGGGAAAGC TACCCCAGGC TCCTCCCAAA GGCCAGGCAG
  R
  TAACAACTCC GCTCACCTGC TTCTCTGCCA GGCGCCTCAC AGATCCACCG GTCCCATTCT
  TCCATTGCAG GACTGGGTGG GTGGGACACA GCACTCCTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37543572	NES08892370	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G		G	G	A	G		A
ss45326778	mCV22928850	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					A
ss148112319	ENSMUSSNP4878639	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					A
ss320588299	CHEV_2_158084570	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27303953					SNP	A	A	G	G	G	G	G	A	G	G	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37543572	NES08892370	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158100754 () rs orientation: forward

Symbol	Name	Function Class
Bpi	bactericidal permeablility increasing protein	within coordinates
Cpgi12591	CpG island 12591	652 bp distal
Gm34571	predicted gene, 34571	790 bp upstream
Rr568712	regulatory region 568712	1544 bp distal
Rr568713	regulatory region 568713	730 bp distal
Rr568714	regulatory region 568714	81 bp distal
Rr568715	regulatory region 568715	163 bp proximal
Tssr727	transcription start site region 727	615 bp downstream
Tssr21302	transcription start site region 21302	725 bp downstream
Tssr21303	transcription start site region 21303	625 bp downstream
Tssr21304	transcription start site region 21304	602 bp downstream
Tssr21305	transcription start site region 21305	588 bp downstream
Tssr21306	transcription start site region 21306	558 bp downstream
Tssr27222	transcription start site region 27222	111 bp downstream