rs27303956 SNP Detail

Summary

• ID
  rs27303956
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158100479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCCTGAC AGCCGCCACC
  GACCCTGGCT TCGTGGCCAT GATCTCCCAG AAGGGTCTGG ACTTCGGTAA TTGGATGCCT
  TTCTCTCTTC CTCCCCTTCC CTGACAGGGC ACTTAGGGTG CACAGCCCTT TAAATCGGAT
  GCCTGGCAAG TTCACTGCTT CCCCCCCCCT CCTATTTTAC ATAGAAAGAA ACTAAGGCAC
  S
  GTCTCATAGG ACTAGAAAAG TGTCAGAGCT GGGACTGGAT CACACTACTC TAGAAGATTC
  CAAGTGCCCC GGGGCTCTGA GGGTCCCCAC GGTCCCTTCT CTCTACACCG TGACATTTCT
  AGGCCTTTTC TTTCCAAAGT CAGTCGTCTG CCTTACCTCC TTTGTTAGAG ACTAAGCAGG
  CAGGGGGTGC CGGGGGGCGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37543575	NES08892367	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27303956					SNP	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37543575	NES08892367	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158100479 () rs orientation: forward

Symbol	Name	Function Class
Bpi	bactericidal permeablility increasing protein	within coordinates
Cpgi12591	CpG island 12591	377 bp distal
Gm34571	predicted gene, 34571	515 bp upstream
Rr568712	regulatory region 568712	1269 bp distal
Rr568713	regulatory region 568713	455 bp distal
Rr568714	regulatory region 568714	173 bp proximal
Rr568715	regulatory region 568715	438 bp proximal
Tssr727	transcription start site region 727	340 bp downstream
Tssr21302	transcription start site region 21302	450 bp downstream
Tssr21303	transcription start site region 21303	350 bp downstream
Tssr21304	transcription start site region 21304	327 bp downstream
Tssr21305	transcription start site region 21305	313 bp downstream
Tssr21306	transcription start site region 21306	283 bp downstream
Tssr27222	transcription start site region 27222	386 bp downstream