rs27303958 SNP Detail

Summary

• ID
  rs27303958
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158100257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACGTTGAT GGGGAACCGC
  AGCTGCCCTC CCCCTCCCGC CCCCACGGCT GCCTTCCTCC TTCCTCTTTC TACTACTGCC
  CTGCCCTTCC CCAGAAGGCT TCTTTATAGG TCTCAGGTTC CCATCCGAGG CCTTGTGGTT
  TGGGCTGCCC TAGAGGACAT GACCTGGGCC CCTGACAACG TGCGGAAATG GTCAGCCCTG
  K
  TGCTGCTGGC CATCATTGGC ACAGCCCTGA CAGCCGCCAC CGACCCTGGC TTCGTGGCCA
  TGATCTCCCA GAAGGGTCTG GACTTCGGTA ATTGGATGCC TTTCTCTCTT CCTCCCCTTC
  CCTGACAGGG CACTTAGGGT GCACAGCCCT TTAAATCGGA TGCCTGGCAA GTTCACTGCT
  TCCCCCCCCC TCCTATTTTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37543577	NES08892365	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27303958					SNP	T	T	T	T	T	T	G	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37543577	NES08892365	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158100257 () rs orientation: forward

Symbol	Name	Function Class
Bpi	bactericidal permeablility increasing protein	within coordinates
Cpgi12591	CpG island 12591	155 bp distal
Gm34571	predicted gene, 34571	293 bp upstream
Rr568712	regulatory region 568712	1047 bp distal
Rr568713	regulatory region 568713	233 bp distal
Rr568714	regulatory region 568714	395 bp proximal
Rr568715	regulatory region 568715	660 bp proximal
Tssr727	transcription start site region 727	118 bp downstream
Tssr21302	transcription start site region 21302	228 bp downstream
Tssr21303	transcription start site region 21303	128 bp downstream
Tssr21304	transcription start site region 21304	105 bp downstream
Tssr21305	transcription start site region 21305	91 bp downstream
Tssr21306	transcription start site region 21306	61 bp downstream
Tssr27222	transcription start site region 27222	608 bp downstream