rs27303959 SNP Detail

Summary

• ID
  rs27303959
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158100225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCCACTG GGGCAGCCCC
  TGGACTGGTC CCCAACGTTG ATGGGGAACC GCAGCTGCCC TCCCCCTCCC GCCCCCACGG
  CTGCCTTCCT CCTTCCTCTT TCTACTACTG CCCTGCCCTT CCCCAGAAGG CTTCTTTATA
  GGTCTCAGGT TCCCATCCGA GGCCTTGTGG TTTGGGCTGC CCTAGAGGAC ATGACCTGGG
  S
  CCCTGACAAC GTGCGGAAAT GGTCAGCCCT GTTGCTGCTG GCCATCATTG GCACAGCCCT
  GACAGCCGCC ACCGACCCTG GCTTCGTGGC CATGATCTCC CAGAAGGGTC TGGACTTCGG
  TAATTGGATG CCTTTCTCTC TTCCTCCCCT TCCCTGACAG GGCACTTAGG GTGCACAGCC
  CTTTAAATCG GATGCCTGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37543578	NES08892364	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	G	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27303959					SNP	C	C	C	C	C	C	C	G	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37543578	NES08892364	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158100225 () rs orientation: forward

Symbol	Name	Function Class
Bpi	bactericidal permeablility increasing protein	within coordinates
Cpgi12591	CpG island 12591	123 bp distal
Gm34571	predicted gene, 34571	261 bp upstream
Rr568712	regulatory region 568712	1015 bp distal
Rr568713	regulatory region 568713	201 bp distal
Rr568714	regulatory region 568714	427 bp proximal
Rr568715	regulatory region 568715	692 bp proximal
Tssr727	transcription start site region 727	86 bp downstream
Tssr21302	transcription start site region 21302	196 bp downstream
Tssr21303	transcription start site region 21303	96 bp downstream
Tssr21304	transcription start site region 21304	73 bp downstream
Tssr21305	transcription start site region 21305	59 bp downstream
Tssr21306	transcription start site region 21306	29 bp downstream
Tssr27222	transcription start site region 27222	640 bp downstream