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rs27303961 SNP Detail
Summary
  • ID
    rs27303961
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr2:158099798 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCCCCCCCAC CCCCCACCAC
    CACTCTATAG GAGAGGAAAC CGAGGCACAG AGAAGCACAG AGAGGCTGAG ACCAGCCTTA
    AAGAGTAGCT GAGATGCCAA GGACAAGACT CCAGAATTAG AGCACTAAAA AAGTACCCCT
    GCAGCCTGGG ATGGGGGACA CCTCCAAAGG TCCCGTTTTT TAAACAATTT ACTACGGATA
    Y
    AACCAAAGGG ATAGGAACTA GAGACAGGGA GTCTCCGTGT GGTCACCACC CAGCTTGAAA
    GAAAGCCTTA CATGAGGCGA GGAGGACGCA AGAAAAGGAT GGACTGCTTA GGAAGAGGAA
    TCCGTCCCAG AGCCACAGGT CTCAACAGGC TCGCGCGTGC TGGCATGGGT GGGCGCGTGC
    ACGTGCACAG CACATGCGCA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss37543580 NES08892362 PERLEGEN MM_PANEL2 f SNP C C C C C C C T T C C C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs27303961 SNP C C C C C C C T T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37543580 NES08892362 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:158099798 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Bpi bactericidal permeablility increasing protein 216 bp upstream
Cpgi12591 CpG island 12591 8 bp proximal
Gm34571 predicted gene, 34571 within coordinates
Rr568712 regulatory region 568712 588 bp distal
Rr568713 regulatory region 568713 156 bp proximal
Rr568714 regulatory region 568714 854 bp proximal
Rr568715 regulatory region 568715 1119 bp proximal
Tssr727 transcription start site region 727 340 bp upstream
Tssr21302 transcription start site region 21302 187 bp upstream
Tssr21303 transcription start site region 21303 325 bp upstream
Tssr21304 transcription start site region 21304 347 bp upstream
Tssr21305 transcription start site region 21305 359 bp upstream
Tssr21306 transcription start site region 21306 382 bp upstream
Tssr27222 transcription start site region 27222 1067 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory