rs27303962 SNP Detail

Summary

• ID
  rs27303962
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158099676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCTAGGGGC GAAGGTGATA GTCCCCCCCC ACCCCCCACC
  ACCACTCTAT AGGAGAGGAA ACCGAGGCAC AGAGAAGCAC AGAGAGGCTG AGACCAGCCT
  W
  AAAGAGTAGC TGAGATGCCA AGGACAAGAC TCCAGAATTA GAGCACTAAA AAAGTACCCC
  TGCAGCCTGG GATGGGGGAC ACCTCCAAAG GTCCCGTTTT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37543581	NES08892361	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	A	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27303962					SNP	T	T	T	T	T	T	T	A	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37543581	NES08892361	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158099676 () rs orientation: forward

Symbol	Name	Function Class
Bpi	bactericidal permeablility increasing protein	338 bp upstream
Cpgi12591	CpG island 12591	130 bp proximal
Gm34571	predicted gene, 34571	within coordinates
Rr568712	regulatory region 568712	466 bp distal
Rr568713	regulatory region 568713	278 bp proximal
Rr568714	regulatory region 568714	976 bp proximal
Rr568715	regulatory region 568715	1241 bp proximal
Tssr727	transcription start site region 727	462 bp upstream
Tssr21302	transcription start site region 21302	309 bp upstream
Tssr21303	transcription start site region 21303	447 bp upstream
Tssr21304	transcription start site region 21304	469 bp upstream
Tssr21305	transcription start site region 21305	481 bp upstream
Tssr21306	transcription start site region 21306	504 bp upstream
Tssr27222	transcription start site region 27222	1189 bp downstream