rs27303964 SNP Detail

Summary

• ID
  rs27303964
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158099491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATGTATT CAGAGAAAGG
  GAACTTTCCC GGGCTAACCA ATAGGATCCC ATGTCTGATA GGAAAACAAA CAGGCAGAAC
  TAACTATCTA TGCTTGCCAG GAAAAAAAAA ATGGGACAGG CGAAAATTAA AATATGTTTG
  GTGTTGTGTC TTGGAGACGA GTCCATGTAA CTGATTCTCG TATTTATTTC TGAAGTTCCG
  K
  TTAAGGCTCC CATCTGGATT CTCTTTCTCG CAAGGCACAC TATGCCTGCT TTCCCTACTG
  GAAGGCCATC CTGTCCTCAC AGTAAGCTAG GGGCGAAGGT GATAGTCCCC CCCCACCCCC
  CACCACCACT CTATAGGAGA GGAAACCGAG GCACAGAGAA GCACAGAGAG GCTGAGACCA
  GCCTTAAAGA GTAGCTGAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37543583	NES08892359	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	T	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27303964					SNP	G	G	G	G	G	G	G	T	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37543583	NES08892359	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158099491 () rs orientation: forward

Symbol	Name	Function Class
Bpi	bactericidal permeablility increasing protein	523 bp upstream
Cpgi12591	CpG island 12591	315 bp proximal
Gm34571	predicted gene, 34571	within coordinates
Rr568712	regulatory region 568712	281 bp distal
Rr568713	regulatory region 568713	463 bp proximal
Rr568714	regulatory region 568714	1161 bp proximal
Rr568715	regulatory region 568715	1426 bp proximal
Tssr727	transcription start site region 727	647 bp upstream
Tssr21302	transcription start site region 21302	494 bp upstream
Tssr21303	transcription start site region 21303	632 bp upstream
Tssr21304	transcription start site region 21304	654 bp upstream
Tssr21305	transcription start site region 21305	666 bp upstream
Tssr21306	transcription start site region 21306	689 bp upstream
Tssr27222	transcription start site region 27222	1374 bp downstream