rs27303965 SNP Detail

Summary

• ID
  rs27303965
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158099448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAACTGGG TTTAGGAAAC
  GATGGAATAT TGAAAGCCGG GGGAGAATGT ATTCAGAGAA AGGGAACTTT CCCGGGCTAA
  CCAATAGGAT CCCATGTCTG ATAGGAAAAC AAACAGGCAG AACTAACTAT CTATGCTTGC
  CAGGAAAAAA AAAATGGGAC AGGCGAAAAT TAAAATATGT TTGGTGTTGT GTCTTGGAGA
  Y
  GAGTCCATGT AACTGATTCT CGTATTTATT TCTGAAGTTC CGGTTAAGGC TCCCATCTGG
  ATTCTCTTTC TCGCAAGGCA CACTATGCCT GCTTTCCCTA CTGGAAGGCC ATCCTGTCCT
  CACAGTAAGC TAGGGGCGAA GGTGATAGTC CCCCCCCACC CCCCACCACC ACTCTATAGG
  AGAGGAAACC GAGGCACAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37543584	NES08892358	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27303965					SNP	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37543584	NES08892358	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158099448 () rs orientation: forward

Symbol	Name	Function Class
Bpi	bactericidal permeablility increasing protein	566 bp upstream
Cpgi12591	CpG island 12591	358 bp proximal
Gm34571	predicted gene, 34571	within coordinates
Rr568712	regulatory region 568712	238 bp distal
Rr568713	regulatory region 568713	506 bp proximal
Rr568714	regulatory region 568714	1204 bp proximal
Rr568715	regulatory region 568715	1469 bp proximal
Tssr727	transcription start site region 727	690 bp upstream
Tssr21302	transcription start site region 21302	537 bp upstream
Tssr21303	transcription start site region 21303	675 bp upstream
Tssr21304	transcription start site region 21304	697 bp upstream
Tssr21305	transcription start site region 21305	709 bp upstream
Tssr21306	transcription start site region 21306	732 bp upstream
Tssr27222	transcription start site region 27222	1417 bp downstream