rs27303968 SNP Detail

Summary

• ID
  rs27303968
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158099295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTGGTCCC TGAGAAGGAG GGGTGAAATG TGTGAAAACA
  GATATCTGGT TAAGAAAACT GGGTTTAGGA AACGATGGAA TATTGAAAGC CGGGGGAGAA
  Y
  GTATTCAGAG AAAGGGAACT TTCCCGGGCT AACCAATAGG ATCCCATGTC TGATAGGAAA
  ACAAACAGGC AGAACTAACT ATCTATGCTT GCCAGGAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37543587	NES08892355	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T			T	C		C	T	C	C		C
ss45279985	mCV22928849	ABI	CRAMUS_MOUSE	f	SNP		C	T					T	C
ss148112309	ENSMUSSNP7274	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						C
ss320588297	CHEV_2_158083111	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27303968					SNP	C	C	T	T	T	T	T	T	C	T	C	T	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37543587	NES08892355	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158099295 () rs orientation: forward

Symbol	Name	Function Class
Bpi	bactericidal permeablility increasing protein	719 bp upstream
Cpgi12591	CpG island 12591	511 bp proximal
Gm34571	predicted gene, 34571	within coordinates
Rr568712	regulatory region 568712	85 bp distal
Rr568713	regulatory region 568713	659 bp proximal
Rr568714	regulatory region 568714	1357 bp proximal
Rr568715	regulatory region 568715	1622 bp proximal
Tssr727	transcription start site region 727	843 bp upstream
Tssr21302	transcription start site region 21302	690 bp upstream
Tssr21303	transcription start site region 21303	828 bp upstream
Tssr21304	transcription start site region 21304	850 bp upstream
Tssr21305	transcription start site region 21305	862 bp upstream
Tssr21306	transcription start site region 21306	885 bp upstream
Tssr27222	transcription start site region 27222	1570 bp downstream